rs213441503 SNP Detail

Summary

• ID
  rs213441503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7505530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATAGAGC GACAGAAGGT
  GTGGGGGCGG GGTGGGGGAG GGTTGGCACC CGCCCCTCCC AAAAAGAATG CACCCCGGTA
  GATGACGACC CTTTCACCCC CGGAGCAGAT CTAGAGGAGG ACGATCCAAT TTTGCCTCTC
  CAAAAAACCC CAGACTCCTC GTTCTCAGCG CATGTCCAGT AAACCCATGC CCCCAGCTCT
  Y
  TCCCACCTTA AGAGATCACC TCCGCCATCT CCCTCTTCTT CGTCACCTCA AAATCGGCTT
  TCTCCCTAAC CGGTAGCGAC CCCTCCCCAT CCCCATCTCC TCAGACACAA CCATCGTCAT
  CTGACTCACC TTTACCACTG CAGACCTCTC CCCTCTGCTG TTGTGACTCA CCTTCAGCAC
  TTGGTGCCCC CTCCCCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888088	CHEV_X_7216417	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213441503					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7505530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22570	CpG island 22570	341 bp distal
Rr689617	regulatory region 689617	810 bp distal
Rr689618	regulatory region 689618	within coordinates
Syp	synaptophysin	within coordinates
Tssr160397	transcription start site region 160397	594 bp downstream
Tssr160398	transcription start site region 160398	1802 bp upstream