rs213447332 SNP Detail

Summary

• ID
  rs213447332
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173917152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATTCCTCC ATGCATTCAT
  TGTGTTATGT GTCTCAAAGA TACTTTTCAT ACGGATACTG TTGCACACAA GCACAGGAGC
  ACCCGCTCTT AAAAGCAAAA GCACCCGGGG CTCAAGAGCC TGACCCTACG CGCGGCTCCC
  ACGCCTGCCT CCTGGCACCC GGGAGAGGCA GGGGACCCTC AAGTCAGGCC AAACTGTTCC
  H
  AATCTGATCC CAAAGCTGAG AGCAAGATTG AGGGCAAGAC ACCCCATAAA GTCGCTCTGC
  AGATATTGGT CTGTCATCCA GGCTTGCCGG TGACCCCAGC CTCCGGAGCT GCTGTTCACT
  GAGTGCGGCA GCTGCAGCCC TGGGGGGCCC TGGGAGACGC CCCCACCCCC CAAGCCAGGG
  TAGCAACGAG TGGGATGCAT                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356682613	MGP_WTSI_2_173900860	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213447332					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356682613	MGP_WTSI_2_173900860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173917152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	55 bp distal
Cpgi12852	CpG island 12852	788 bp proximal
Gm75644	predicted gene, 75644	405 bp upstream
Rr572060	regulatory region 572060	1641 bp distal
Rr572061	regulatory region 572061	416 bp distal
Rr572062	regulatory region 572062	within coordinates
Rr572063	regulatory region 572063	887 bp proximal
Rr572064	regulatory region 572064	1073 bp proximal
Rr572065	regulatory region 572065	1574 bp proximal
Stx16	syntaxin 16	949 bp upstream
Tssr22077	transcription start site region 22077	937 bp upstream
Tssr22078	transcription start site region 22078	1686 bp upstream