rs213447352 SNP Detail

Summary

• ID
  rs213447352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110677437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGCACTT ATGAAGGATA
  GATTCATGAA TAAGATCAAG CTTGCCAAGT TCTCCAATGA ATTTGATGTT CCCCAACATC
  TTGATCTTAG CAATGGCTCT CTGTTCCTCC TCCTCAGGAA GGAGGGGATT TTCACGCTTA
  TCATAGACTG AGGGAAGGGA GGCAAACAAA ATAAAGAACA CTTAGGCCAT GAAAGGTGTG
  Y
  ACGCACACAT AAAACTACCC AAGAGCAAAT TTAAATTCTT ACCATCAACA TTTCTGGTTC
  GGTTTTCAAA TTCATCTTGC AATTTGGAAA TCAAGAGGCG TCTGAATGTC TATTTGAAAA
  CAAAAAGTAT TTGTAAAAAG AAAAAAAATT TCAAATTAAT TTCAAAACAA AGAAAAAAAA
  CTGTCACTCA CTGTGCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372719379	MGP_WTSI_7_118221744	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213447352					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372719379	MGP_WTSI_7_118221744	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110677437 () rs orientation: forward

Symbol	Name	Function Class
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Rr159269	regulatory region 159269	1437 bp distal
Rr166519	regulatory region 166519	1563 bp proximal
Rr166520	regulatory region 166520	1963 bp proximal
Rr168547	regulatory region 168547	1837 bp distal
Tssr68538	transcription start site region 68538	1945 bp upstream
Tssr74289	transcription start site region 74289	1999 bp upstream
Tssr74290	transcription start site region 74290	1832 bp upstream
Tssr74291	transcription start site region 74291	91 bp upstream
Tssr74292	transcription start site region 74292	274 bp downstream
Tssr74293	transcription start site region 74293	326 bp downstream
Tssr74294	transcription start site region 74294	1086 bp downstream