rs213452680 SNP Detail

Summary

• ID
  rs213452680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88197767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTCACC CTCTCAATTC
  TTGCCCCAGA TCCTGCCGCG CCCGCCATCG CCTGTTTGTG CCCTTGCAGT GCCAGCGTCG
  GCCTAGGGCC AGGCGCCCTG TCCCCAGTCG CGTTTTCGGC CTCTGCGGGT GCTCTAAGGA
  AACGCAGACA TCTTTGGGGA CCTGGCTAGC GGGTGGGTGC TGGCTCTGAA GTGGCTGGCC
  Y
  GGGAGGGCGT AGCACCACCT CTCCCACCCC CACCTCAACC CCTTTTCTCT GTCCACCCTA
  CGAGATTCAA GTTTAAAAAC AAGTCTGCAA AGGAAGGATG TGGGGTTAGT GAACGCGATT
  CTGTCCGCGG TGGGGGAAGA AAAAAACAAA AAACAAAAAA AGGAAAAAGC AGGCAGAAAG
  GCTTTGGGCT GGAGCCTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375466002	MGP_WTSI_8_89995038	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213452680					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375466002	MGP_WTSI_8_89995038	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88197767 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	within coordinates
Cbln1os	cerebellin 1 precursor protein opposite strand	1673 bp upstream
Cpgi20770	CpG island 20770	1448 bp distal
Cpgi20771	CpG island 20771	within coordinates
Cpgi20772	CpG island 20772	456 bp proximal
Rr382427	regulatory region 382427	1864 bp downstream
Rr666962	regulatory region 666962	1237 bp proximal
Rr666963	regulatory region 666963	1362 bp proximal
Rr666964	regulatory region 666964	1815 bp proximal
Rr666965	regulatory region 666965	1901 bp proximal
Tssr2634	transcription start site region 2634	1387 bp downstream
Tssr78595	transcription start site region 78595	1632 bp upstream
Tssr78596	transcription start site region 78596	1644 bp upstream
Tssr78597	transcription start site region 78597	1666 bp upstream
Tssr78598	transcription start site region 78598	1699 bp upstream
Tssr78599	transcription start site region 78599	1727 bp upstream
Tssr78600	transcription start site region 78600	1750 bp upstream
Tssr78601	transcription start site region 78601	1757 bp upstream
Tssr82308	transcription start site region 82308	1217 bp upstream
Tssr82309	transcription start site region 82309	1030 bp upstream
Tssr82310	transcription start site region 82310	837 bp upstream
Tssr82311	transcription start site region 82311	678 bp upstream
Tssr82312	transcription start site region 82312	488 bp upstream
Tssr82313	transcription start site region 82313	462 bp upstream
Tssr82314	transcription start site region 82314	982 bp downstream
Tssr82315	transcription start site region 82315	1022 bp downstream
Tssr82316	transcription start site region 82316	1061 bp downstream
Tssr82317	transcription start site region 82317	1226 bp downstream
Tssr82318	transcription start site region 82318	1404 bp downstream
Tssr82319	transcription start site region 82319	1437 bp downstream
Tssr82320	transcription start site region 82320	1464 bp downstream
Tssr82321	transcription start site region 82321	1476 bp downstream