rs213458544 SNP Detail

Summary

• ID
  rs213458544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128582709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCAGAGG CACTGTTCCA
  TATTCTCATC TCCTTCTCCT CTTTGAGGAA AGGGTACTAG ATAGACAGGA CTTAAGTGCA
  ATTGATGAAC AAACAGATAC GGGCTGGTAG GCTTGGGCCA GAATGGTTGC CTGACTTAAT
  GCTAGCTACA CTCTAGGTTC CACTCCCCAG CATCCCTCCC TCCACCATAC CCAAATGCAG
  R
  AGGAAGCAAA GGCATAGGTG AGGGATTATC ACACACACAA AGTGAGGGAT TAGAAGTATA
  CATGTAGCCG GGCCGTGGTG GTGTACACCT TTAATCCCAG TACTTGGGAG GCAGAGACAG
  GCAGATTTCT GAGTTCGAGG CCAGTCTGGT CTACAAAGTG AGTTCCAGGA CAGCCAGGGC
  TATACAGAGA AACCCTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210100	MGP_WTSI_10_128183896	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213458544					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210100	MGP_WTSI_10_128183896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128582709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	862 bp proximal
Dgka	diacylglycerol kinase, alpha	1985 bp upstream
Gm31504	predicted gene, 31504	958 bp downstream
Gm66065	predicted gene, 66065	491 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	1049 bp upstream
Rr224483	regulatory region 224483	508 bp distal
Rr224484	regulatory region 224484	491 bp proximal
Rr385481	regulatory region 385481	485 bp upstream
Rr402364	regulatory region 402364	1891 bp downstream
Tssr96441	transcription start site region 96441	1817 bp downstream
Tssr96442	transcription start site region 96442	1606 bp downstream
Tssr96443	transcription start site region 96443	366 bp downstream
Tssr96444	transcription start site region 96444	948 bp upstream
Tssr96445	transcription start site region 96445	1010 bp upstream
Tssr96446	transcription start site region 96446	1661 bp upstream
Tssr96447	transcription start site region 96447	1911 bp upstream
Tssr99949	transcription start site region 99949	1953 bp upstream
Tssr99950	transcription start site region 99950	1782 bp upstream
Tssr99951	transcription start site region 99951	1759 bp upstream
Tssr99952	transcription start site region 99952	1755 bp upstream
Tssr99953	transcription start site region 99953	1718 bp upstream
Tssr99954	transcription start site region 99954	1374 bp upstream
Tssr99955	transcription start site region 99955	1341 bp upstream
Tssr99956	transcription start site region 99956	588 bp upstream
Tssr99957	transcription start site region 99957	528 bp upstream
Tssr99958	transcription start site region 99958	788 bp downstream
Tssr99959	transcription start site region 99959	880 bp downstream