rs213460426 SNP Detail

Summary

• ID
  rs213460426
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77740079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGATCTGGG TAAGTAATGT GAGACATGGT
  AAACAGTTCA TTCGGTCTGT TGTTGAGAGG AGCATCTCTA GTTGCTGAGA atatatatat
  atatatatat atatatatat atattatata tatatatata tatataGTTA GAAGTGGCTG
  K
  TGGAttatgt atatgtatat ataattattt atttaatgta gccatcttca gacacaccag
  aagaggacat cggatcccat tacagatggt tgtgaacccc catgtgattg ctcggaattg
  aactcaggac ctctggaaga gcagtcagta                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323363345	CHEV_10_77366990	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213460426					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77740079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1765	CpG island 1765	822 bp distal
Gm53590	predicted gene, 53590	within coordinates
Gm66732	predicted gene, 66732	within coordinates
Gm66819	predicted gene, 66819	846 bp downstream
Lrrc3	leucine rich repeat containing 3	1709 bp upstream
Rr434596	regulatory region 434596	1859 bp distal
Rr434597	regulatory region 434597	1720 bp distal
Rr434598	regulatory region 434598	738 bp distal
Rr434599	regulatory region 434599	474 bp distal
Tssr98252	transcription start site region 98252	1784 bp upstream
Tssr98253	transcription start site region 98253	1716 bp upstream