rs213463880 SNP Detail

Summary

• ID
  rs213463880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152102047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGGGGCC GGAGCCCTTC
  AGAGCGAGCG AGCGCCGGGA GGGGGTGGCC GAGGCGGCGG CGGCGGCGGC GCCCCCACGT
  GGGCCGGGCG CGCGCGTTCG CGGCTGAGGG GGCGGGGAGG CCTGCGGAGG CGCCGGGCGC
  GCGCGCGGGG CTCACGTGAC GGCCACGTGA CCGGAGGCCA GGCCGGCTGA GGGCTAGCGC
  R
  GTCCTCCGTG GCGTCCGGAG GGCGGCAGAG GGCTGAGTTT GGCGTCCCGC CTTTCCTTCT
  CCCCTCAGAC GACTCAGAGG AGGAATCCAG GGCGGGGAAG GCTTGCCTCT CCTCCCGTTT
  GCCCGCGGCC TCCCAGTGCG AGGACGAACC ACACGTTCAA AGTCCCGAAG TAGTGATTAG
  CTTCCCCCAC GCCGCCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028815	CHEV_3_152059374	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213463880					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152102047 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13949	CpG island 13949			1648 bp distal
Cpgi13950	CpG island 13950			within coordinates
Gm66519	predicted gene, 66519			1733 bp upstream
Rr587542	regulatory region 587542			927 bp distal
Rr587543	regulatory region 587543			268 bp distal
Rr587544	regulatory region 587544			488 bp distal
Rr587545	regulatory region 587545			428 bp distal
Rr587546	regulatory region 587546			339 bp distal
Rr587547	regulatory region 587547			within coordinates
Rr587548	regulatory region 587548			149 bp distal
Rr587549	regulatory region 587549			114 bp distal
Rr587550	regulatory region 587550			287 bp proximal
Rr587551	regulatory region 587551			295 bp proximal
Rr587552	regulatory region 587552			1287 bp proximal
Tssr32410	transcription start site region 32410			921 bp downstream
Tssr32411	transcription start site region 32411			351 bp downstream
Tssr32412	transcription start site region 32412			328 bp downstream
Tssr32413	transcription start site region 32413			16 bp downstream
Tssr32414	transcription start site region 32414			254 bp upstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant