rs213464246 SNP Detail

Summary

• ID
  rs213464246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGGAGCA CACAGGTCTC AATCTTGTTT CTCATCCCCT
  TCTTTTGCGT CTGTTAAACT GGGGCCACGG ACTCTGCCGC CTTCCTAAGT GTGTACTCAT
  R
  GTGCCTAAAA CCCACAGAGG CACTTTATAA ACCTCGACAC ACTGCATCCG TTTAATGGCG
  TCGAAAGGGA AGGGAACTGA TGTTTGGCCA CTGGAGGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730632	CHEV_11_69413007	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213464246					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490331 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	231 bp downstream
Gm72066	predicted gene, 72066	224 bp upstream
Rr386229	regulatory region 386229	within coordinates
Rr450033	regulatory region 450033	43 bp proximal
Rr450034	regulatory region 450034	84 bp proximal
Rr450035	regulatory region 450035	536 bp proximal
Tssr3544	transcription start site region 3544	1190 bp downstream
Tssr102487	transcription start site region 102487	508 bp upstream
Tssr102488	transcription start site region 102488	1658 bp upstream
Tssr102489	transcription start site region 102489	1733 bp upstream
Tssr108712	transcription start site region 108712	502 bp downstream
Tssr108713	transcription start site region 108713	647 bp downstream
Tssr108714	transcription start site region 108714	729 bp downstream
Tssr108715	transcription start site region 108715	742 bp downstream
Tssr108716	transcription start site region 108716	1054 bp downstream
Tssr108717	transcription start site region 108717	1079 bp downstream
Tssr108718	transcription start site region 108718	1138 bp downstream
Tssr108719	transcription start site region 108719	1149 bp downstream
Tssr108720	transcription start site region 108720	1153 bp downstream
Tssr108721	transcription start site region 108721	1167 bp downstream
Tssr108722	transcription start site region 108722	1248 bp downstream
Tssr108723	transcription start site region 108723	1276 bp downstream
Tssr108724	transcription start site region 108724	1329 bp downstream
Tssr108725	transcription start site region 108725	1353 bp downstream
Tssr108726	transcription start site region 108726	1448 bp downstream
Tssr108727	transcription start site region 108727	1470 bp downstream
Tssr108728	transcription start site region 108728	1514 bp downstream
Tssr108729	transcription start site region 108729	1601 bp downstream
Tssr108730	transcription start site region 108730	1633 bp downstream
Tssr108731	transcription start site region 108731	1664 bp downstream
Tssr108732	transcription start site region 108732	1725 bp downstream