rs213467258 SNP Detail

Summary

• ID
  rs213467258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54598424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATACATG CTGGTAGTAC
  TGTGACTCCT CTCTCCTAGC CTTCACTTCA CACTGAGAAG AATGCCTTGA ATTCAGTGAT
  AAGGACCGGC TACAGAGAGG CAAGACTTAG GGAGCAGGGG AGAAAATGAA ACTCAAGAAA
  ATAGCATGTA GCCAGGTTAG AGCTAGGAAG CCAAGCCTTC AACCACAAAA CTGAGACACA
  Y
  AAATGTGGGG GCACTCAGGA CATCAAGATC CCTGACAGTG ACTGGCATCA CTAGCACTCT
  GAGGGCCAGA GAGGGTGGGC CTCTGCTGGA ACAGCTTTCT GTCTGATACT GTCTGATATT
  GATGTTTTAA AACTCAGTGT AGGGTTAGTT GTGGTAGTCT GCACTAATCT CAGCTCTCAG
  GAGCCAGAGG TAGATCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358013622	MGP_WTSI_3_54494925	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213467258					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358013622	MGP_WTSI_3_54494925	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54598424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	1346 bp proximal
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	1559 bp upstream
Rr576827	regulatory region 576827	1624 bp distal
Rr576828	regulatory region 576828	1702 bp distal
Rr576829	regulatory region 576829	1026 bp proximal
Rr576830	regulatory region 576830	1620 bp proximal
Supt20	SPT20 SAGA complex component	1804 bp upstream
Tssr29131	transcription start site region 29131	1772 bp upstream
Tssr29132	transcription start site region 29132	1802 bp upstream
Tssr29133	transcription start site region 29133	1846 bp upstream
Tssr29134	transcription start site region 29134	1880 bp upstream