rs213493922 SNP Detail

Summary

• ID
  rs213493922
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165480915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAGATTC TACTGTAAGT
  TTTGGGATTA TAGTAGAGGA ATAGCACAAG AGACAATAGA AATAAGCAGG GGAGGAGTTG
  GAGAGATTGT TCAGTGGTTA GGGTCACTGG GTTTGGTTTC CGCACTGTGG CTCACAACCA
  TCCCTAACTC CGGTTCTAGA GGTTCCGACG CCCTCTTTGG CCGCCAAAGG CACTACGCAT
  S
  CGCAAAGGAA CTACGCATGC GTATACTACA CATACACACA TACGCAAGCA AAACATGCAT
  ACACATAAAA TGAAATAAAT AAATCTAAAC AAACATCAAA AACCCCAGGA GAATGATGCA
  GTGGAATTAT GGGAGAGAAT AACTGGGGGG TGGGAGCAGA TTCCTTTGCC TGAGATGTCA
  CAAGGCAGGC TTTAGGGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087005	CHEV_1_167583477	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213493922					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165480915 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr422410	regulatory region 422410	200 bp proximal
Rr422411	regulatory region 422411	450 bp proximal
Tssr9810	transcription start site region 9810	533 bp upstream
Tssr9811	transcription start site region 9811	1924 bp upstream
Tssr14774	transcription start site region 14774	756 bp upstream