rs213495407 SNP Detail

Summary

• ID
  rs213495407
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82904668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACTGCCT AGAAGGAAAG
  ATGGGAGGAA ATCAAAACAG TGCCTGGATA AACTTCCTCG ATAGAAGAGA CAGAGCTTGA
  GGTCCAGAGA GATGAAGGAA GTTAGACTCT GGAGACAGGA GTGAAGAGAT GAGAGCTTCA
  TGGTGAAGAC AGAACACTCC TGATGGCTTC CAAGACTTCC TCAGGTGCCT GGTAGCTGAG
  M
  ATCGATTTGT GACAGCAGGG AAGGGCTACC TAATGTGAAA GAAAACACCC CTTGGAAGAC
  ATAGGCCAGA CAACCCTCAA ACTCATATAG ACAAGCAACA GTTGATATTC CAAATAGCCA
  GAATATAATA ACTTTGTAGT GAATGAGTAT TAGGTGGGTC TCAGAAGTAC AGTGCCATGG
  AAATGGGGAC AAATTAGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323044113	CHEV_9_82916222	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213495407					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82904668 () rs orientation: forward

Symbol	Name	Function Class
Gm39383	predicted gene, 39383	within coordinates
Gm57057	predicted gene, 57057	within coordinates
Rr401561	regulatory region 401561	1007 bp upstream
Rr683838	regulatory region 683838	1207 bp proximal
Rr683839	regulatory region 683839	1366 bp proximal
Tssr90739	transcription start site region 90739	1372 bp downstream