rs213497334 SNP Detail

Summary

• ID
  rs213497334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30171158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTTTGT GGCCCACGAG
  GAAACCTACA GTTTAATATG AACCTGGGGA ATGTGAGGCT GGGAAGGAGA AGCTATTTAG
  AGTTGTGCTT GGAAACAGCT TTCTCTAAAG ATGCAGGATA TTTTGGAAAC AGTATTCTAA
  AATCTTTTTC CCCCCCCCAT TTCAATGGAA CAGAGGAGTA GCAATGGGGG AAGGGCCTTG
  R
  GAAGATTGAG ACACACTCAG GGTACCAATG TCCTCCTGAG AACTCAGTCT GGAGCACCCA
  GGAAGGAATG AAGCACCATA AGAGAATAGC CCTGTCGGAT CAAGTGCCTG GCATGCCCGC
  CCTTTTGCCT ACATCTTCCT CTTCTGTAAC TGGAGGGGAT GGAGAGCAGG AAACTGCTTA
  CAGAGCCAAA CACCCCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367828109	MGP_WTSI_6_30121159	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213497334					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367828109	MGP_WTSI_6_30121159	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30171158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17248	CpG island 17248	1757 bp proximal
Mir96	microRNA 96	1608 bp upstream
Mir183	microRNA 183	1422 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1422 bp distal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Mirc40	micro RNA cluster 40, including Mir96 through Mir183	1422 bp distal
Rncr4	retina expressed non-coding RNA 4	1734 bp upstream
Rr146072	regulatory region 146072	757 bp distal
Rr146073	regulatory region 146073	242 bp proximal
Rr146074	regulatory region 146074	1042 bp proximal
Tssr55327	transcription start site region 55327	1701 bp upstream