rs213504182 SNP Detail

Summary

• ID
  rs213504182
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127922514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAATAAC ACCATATTAT
  ACTTGGGGCT AGAGAGATAA TTCACAGTTA AGAATGCTTT TGGCTCTTCC GGTTGCCCAG
  TGTCCATCAG GTGGCTTACC ATCTGTAACT CCAGCTTAGG AGACATGGCG CCCTCTTTTG
  GCTTCCATGG GTACCTGCAT ATACAGTAAA CATGGTCTGG GGCGCGGAGA TGTACAAAAA
  W
  CATGTGCTAG GTGAAATGGC ACTTACCTTT AATCCCAACA CTTAGAAGGC AGGGGCAGGT
  GGATCTCTGA GATTGAGGCC AACCTGCTCT ATGTAGAGTT CCAGGACAGA CAGTGTTGCT
  TCTTGAGGTC CTGAGTTTGA TTCCCAGCAA CTACATGGTG GCTCAAAGCC ATCTGTTATG
  GGATCTTCTG GCATGAAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323531643	CHEV_10_127523701	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213504182					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127922514 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Gm55458	predicted gene, 55458	1285 bp downstream
Mir677	microRNA 677	1282 bp downstream
Rr441098	regulatory region 441098	within coordinates
Rr441099	regulatory region 441099	55 bp distal
Tssr96322	transcription start site region 96322	1117 bp downstream
Tssr96323	transcription start site region 96323	548 bp downstream
Tssr96324	transcription start site region 96324	478 bp downstream
Tssr96325	transcription start site region 96325	339 bp downstream
Tssr96326	transcription start site region 96326	323 bp downstream
Tssr96327	transcription start site region 96327	296 bp downstream
Tssr96328	transcription start site region 96328	256 bp downstream
Tssr96329	transcription start site region 96329	1668 bp upstream
Tssr96330	transcription start site region 96330	1728 bp upstream