rs213516913 SNP Detail

Summary

• ID
  rs213516913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:104893670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGTACC CCCTGGAGCT
  CGTGTCTCTA GCTGCATATG TATCAGAAGA TGGCCTAGCC AGCCATCAGT GGAAAGAGAG
  GCCCATTGGT CTTGCAAACT TTATATGCCT CAGTACAGGG GAACAGGGAA CGCCAGGGCC
  AAGAAGTGGG AGTGGGTGGG AAGGGGAGTT GGGGGGAGGG TATGGGGGAC TTTTGGGATA
  R
  CATTGGAAAT GTAAATGAAG AAAATACCTA ATTAAAATAA AATAAAGTTC TTCTCACTTA
  GCCAGCAAGA TCCTCCCTGG TCTTCCACTC ATTTAGGCTA AGGAGGAAGG GCTGAGGCAA
  AGTCTTCCAA CCTTTCCAAA AACCAGGAGG TTTTGTGTCT CCTATTTATC ACCAGTAGTG
  CTTTCTCTAA CAGATGCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ	SWR/J
ss378791722	MGP_WTSI_9_104918801	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ	SWR/J
rs213516913					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378791722	MGP_WTSI_9_104918801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:104893670 () rs orientation: forward

Symbol	Name	Function Class
Cpne4	copine IV	within coordinates
Tssr86830	transcription start site region 86830	1897 bp upstream
Tssr86831	transcription start site region 86831	1929 bp upstream