rs213525290 SNP Detail

Summary

• ID
  rs213525290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:19486341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAATCT CTTTTAAAAT
  GGGTCGGGGT GGAGAGACAT CTCAGTGGCT AACAGCACTT GTTGATCTTT CTGAGGACTG
  GGGTTCATTT CCAGCACCCG AATGGTGCTT CACAACCATG ATCTAGACAG GCATACATAT
  ATATGTATAC ATACATACAG GGGAAGCATT CATATGTGTA AAATCTCAAA ATCCTTATAG
  R
  GCAGGGCACT TACGTCTGTT TTTCAGTACA GAATAAATAG CTGGTGGATA AAAGCCTGCT
  CCGAGTAGCT GAGAAGGAAA AGCAGATTTC CCTGGACAGT AGAGGGTCTA GGCGTTTCCT
  GCAGACGGAG GGAGAAAGCC TTGAGAAGAG TGTTGTACAG AAAGAGAGTG CTTTTTTTAA
  TTAGGTATTT ATTTCATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323265787	CHEV_10_19330399	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213525290					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:19486341 () rs orientation: forward

Symbol	Name	Function Class
Ifngr1	interferon gamma receptor 1	364 bp downstream
Tssr92550	transcription start site region 92550	1308 bp downstream
Tssr92551	transcription start site region 92551	578 bp downstream
Tssr96927	transcription start site region 96927	1379 bp upstream
Tssr96928	transcription start site region 96928	1347 bp upstream
Tssr96929	transcription start site region 96929	1294 bp upstream