rs213536050 SNP Detail

Summary

• ID
  rs213536050
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139482546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGTGGG GAGAGGGGCC
  TGGGACTGAG AAGGTAAATG GGAGGGGTGT TGCCATTAGG TCAAAGAACC CTGTGGCCAG
  CTGTAGGTTA GAGGCTGTTC CTTCTCTGAG GCCTTGAGAA GTAAGGCCCT TTCCCCAAGG
  GCCCTAGACC AGCTAAAGGC AAGAAAGCTG GAGTGCTCTT GGAGCCTGGG GAGGGGGGGG
  K
  GCTTGTTTTT TTGTCTTTTG AGATAATGTC TCACTCTAGT CCAGTCTGGC CTCGAACTCA
  CAACTACCCT ACCAGATCGG GTCTCGTGTT GTCTAAGGCT GCCCAGGAAC TCCTCCACAC
  ACAGGTAAAT ATAGCCCTGT ATCCACAGGC AACTGCTGGG ATTACAAACT CCCATGCCTG
  GCTTCGGAAA TAGTTACTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321384134	CHEV_4_139311150	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213536050					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139482546 () rs orientation: forward

Symbol	Name	Function Class
Pax7	paired box 7	within coordinates
Rr86808	regulatory region 86808	1746 bp distal
Rr92760	regulatory region 92760	within coordinates
Rr92761	regulatory region 92761	255 bp proximal
Rr103267	regulatory region 103267	1146 bp distal
Rr103268	regulatory region 103268	746 bp distal
Rr103269	regulatory region 103269	1056 bp proximal