rs213543442 SNP Detail

Summary

• ID
  rs213543442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77715450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGGATGG AGAACCATCC
  TGGCCCTTAG CTGTGTCCTT TCTTTGCAAA TCCTCTGTGC TCTAGGAAGC TGAAGGCGTA
  TTCAAAATCC CAGGCAGGTC TTCTTGGTGG CTCTCCATGA CCCACTTTTC AGTCTGTGAA
  CTGCCACAGT GCAGTTTCTG CCTCACAGTG GGCCTGGGCG CCTCTTCTCC CAGATCCCGT
  R
  TTTCTTACAG CCTAAGACTT GGGTGTGGCT AGCTATTGAG ACCCTCTGAA GAGCTCCCTG
  GGATGGGGTG AGATCTGAGA TTTCTTCCTC CTGCGGAAAA TGATATTTGT CTTGGATAAG
  AGAAGACCCC AGAGGGAGGG GTGTGGCTTT GTCTGCGTGG GTTCTGAGGA TGATTGGGTG
  AAATGGAGAG AGGGCTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755833	CHEV_11_77638126	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213543442					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77715450 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm40	DNA segment, Chr 11, Boehm 40	1696 bp proximal
Myo18a	myosin XVIIIA	within coordinates
Rr236557	regulatory region 236557	1050 bp distal
Rr236558	regulatory region 236558	951 bp proximal
Rr251683	regulatory region 251683	1229 bp distal
Rr251684	regulatory region 251684	752 bp proximal