rs213550467 SNP Detail

Summary

• ID
  rs213550467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4746068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTAAC ATCCTTTCCC
  AGTCAGTATT TGAATGCCTT GTTCCTTTGC AAATTTCTCT AACAAAACAA CAACAACAAA
  CAAACAAACA AAAAAAATTT ACAGGTTTAT GTTTCAAGCC AAGGAAATGC TTGGAGCTGA
  GTCTCGGTGA CCTGTTTCAA AGGTTTGAAC CTACAGTTAC TGCTCCCCAA AACATTCATT
  Y
  ACCCACAAGA TTTAGAAACA TAAAACGGCG CGGGGTGGGG GGGGAAGCTG AGGTCTCCGT
  GTAAACCTCA CAAAGTCCGT AGCTGAAGGC TTCCAAAGCC CGCCAAGAAC ATTGGAAGCA
  TCCACAGCTG TTTTCAATTG TTCTTGCTTT CCCTTCGTAA CGTATTTAGT AGGGCAATGG
  GTGCTGTTTG CAGCATCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367234322	MGP_WTSI_6_4696068	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213550467					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367234322	MGP_WTSI_6_4696068	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4746068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17126	CpG island 17126	723 bp proximal
Peg10	paternally expressed 10	1238 bp upstream
Rr146220	regulatory region 146220	within coordinates
Sgce	sarcoglycan, epsilon	within coordinates
Tssr1771	transcription start site region 1771	1230 bp upstream
Tssr1772	transcription start site region 1772	1363 bp upstream
Tssr1773	transcription start site region 1773	1374 bp upstream
Tssr54763	transcription start site region 54763	1292 bp upstream
Tssr54764	transcription start site region 54764	1542 bp upstream
Tssr59724	transcription start site region 59724	323 bp downstream
Tssr59725	transcription start site region 59725	950 bp downstream
Tssr59726	transcription start site region 59726	977 bp downstream
Tssr59727	transcription start site region 59727	998 bp downstream
Tssr59728	transcription start site region 59728	1102 bp downstream