rs213551566 SNP Detail

Summary

• ID
  rs213551566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115079362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGGGTGT TCTAATAGAA
  AACAATCAAA AGGTGTATTA ATCTGATATG TATTAAGGAG TGACATTAAA AAAAAGTCTT
  CGTTTTCTGC AATTAAACAG TTGTGTTTCA TAAGAGCAGA AAACTTTGTG TAGGGCTGGA
  GAGATGGTTC AGAGGTTAAG AGAACTGACT GCTTTTCCAG AGGTCCTGAG TTCAATTCCA
  R
  GAACCACATG GTGGCTCACA ACCATCTGTA TTGGGATCTG GCGCCCTCTT CTGGTGTGTC
  TGAAGACAGC TACAGTATTC ATTCATATAC ATAAAATAAA TCTTAAAAAA AATGTTGCCT
  GGTAGTGGTG GTGTACACCT TTAATCCCAG CACTTGGGTG GCAGAGGCAG TCGGATTTCT
  GAGTTCAAGG CCAGCCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321653897	CHEV_5_115391312	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213551566					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115079362 () rs orientation: forward

Symbol	Name	Function Class
2210016L21Rik	RIKEN cDNA 2210016L21 gene	851 bp upstream
Cpgi16342	CpG island 16342	754 bp proximal
Rr399277	regulatory region 399277	745 bp upstream
Rr618069	regulatory region 618069	38 bp proximal
Rr618070	regulatory region 618070	402 bp proximal
Rr618071	regulatory region 618071	879 bp proximal
Tssr48192	transcription start site region 48192	873 bp upstream
Tssr48193	transcription start site region 48193	913 bp upstream