rs213553442 SNP Detail

Summary

• ID
  rs213553442
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86762583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCCGGGC CGCGATGCCT
  GTAGCCCCGG CCCGGCCCCT GTCTCAGCTC CGCGGTCCCC GCGGTCCCCA CCCGCCGCCG
  CCTCCGCCAG CGCCGCCGCG TCTCTCTAGC GCTCGGCGCA GCGTCCCCAT CCCCGCCCCC
  ACCTCAGCTG GAGCGCCTGC GACGAGTCAG GTGACGGCAG CCGACGAACC CGGGCCAGTC
  S
  TCTGCAGAAC GCCAGCGGCC CCCTCCCTGT CGCTCCTGCT CGCCGCCCCC CTCGGAGCCG
  CGGCTTTAAA CGGGAGGAGG GCCGCACGCG AGCATCCCTG GCGGGCGACG GCGGAGGAGG
  GGGTGGGACC GGAGGGGCGC CGCGGCTCTA TGGCTTGCGT TCTTGCGCGC GCCCTGCGTC
  CCCGCGCGCA CCCGCTGCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss378364441	MGP_WTSI_9_86775365	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	G	C	C	C	C	C	C	C	G	G	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213553442					SNP	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	G	C	C	C	C	C	C	C	G	G	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378364441	MGP_WTSI_9_86775365	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86762583 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	within coordinates
Rr684153	regulatory region 684153	127 bp distal
Rr684154	regulatory region 684154	within coordinates
Snap91	synaptosomal-associated protein 91	within coordinates
Tssr90794	transcription start site region 90794	158 bp upstream
Tssr90795	transcription start site region 90795	118 bp upstream
Tssr90796	transcription start site region 90796	63 bp upstream
Tssr90797	transcription start site region 90797	46 bp upstream
Tssr90798	transcription start site region 90798	28 bp upstream
Tssr90799	transcription start site region 90799	117 bp downstream
Tssr90800	transcription start site region 90800	168 bp downstream