rs213554402 SNP Detail

Summary

• ID
  rs213554402
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19916962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGGCCTC GGGCCGTCCC
  GGGGGAGCCC CCACCCGGCT GCCCGCTTCC TTCTCAGGGC CCTCTGCTTC TTAATTTAGT
  TCCCAATGTT CCCGCCCCCA AGCCCTGGGC ACCCGAGGCG AAGATCGTTC GGGCGGCCGG
  GATTGGGCGC TGCAGGCGGG CCGGGCCGGC GAGTTCCGAA TTTTTATTGG CAGGGGGTGG
  W
  AGGTGGGTGG CCCGTGCCAG GCAGTCCCGC CCTCGCCTGA AGGTGACCTG GAGGACGCGG
  GCGCCGAGGG AGGGGAGCAG CGGGGCGGTG GGTAGGAAGG GGGCGTGCCC TGCAGAGGCC
  AGGGGGTGGG GGCTAACCCG TAGCTCCTGG CGTAGGACAG CGCGCAGCTC TGCGAAGTTG
  CCCTTGCCTG CTCTGTCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss395566640	MGP_WTSI_16_20098285	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213554402					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395566640	MGP_WTSI_16_20098285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19916962 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8066	CpG island 8066	within coordinates
Gm59707	predicted gene, 59707	838 bp upstream
Klhl24	kelch-like 24	within coordinates
Rr317031	regulatory region 317031	1762 bp distal
Rr322960	regulatory region 322960	1941 bp distal
Rr325053	regulatory region 325053	within coordinates
Rr404726	regulatory region 404726	634 bp downstream
Rr404727	regulatory region 404727	within coordinates
Tssr137417	transcription start site region 137417	616 bp downstream
Tssr137418	transcription start site region 137418	597 bp downstream
Tssr140348	transcription start site region 140348	111 bp upstream