rs213555966 SNP Detail

Summary

• ID
  rs213555966
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192377060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCGTTA GACCACATAC
  CCCGCTGAGG TGGCATTCCT AAGACCCTCC TATAACAGTG AGGTCAGCAC TGACATCTGC
  CACCAGTGCC TTGTGCTTGT CCTTTAGAAG ACAGCTGGTC AGCTGCACCA AAAATTCTGT
  AGTATCTTCT GTGCAACAGG AGATATTCTA TATGCCACAT GAACACGCTG TCGCGGTCTC
  K
  CTGGGGCTTC CAGCCATATT AGCTTTTAAA GCAGATGGAC AGTCTGAAGT GATCTTCCAG
  GAAGCTCAAG GAAGGTGAAA ACAGCACCCC AAGTCTTTTC TGGGGTTGTG TGTTGTTCCC
  ATGGAGGATC CATGGGCACC TCTTGAGCTT ATGTCGCATG CAAGTCCCAT TCAGCTTTCT
  TCCCAATTAT GAGACACCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320199534	CHEV_1_194520946	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213555966					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192377060 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426377	regulatory region 426377			1569 bp proximal