rs213556668 SNP Detail

Summary

• ID
  rs213556668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4031212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGTCT GCCTTTGCAG
  GAGAGCCAGG CTGAGAAACC CAGACTGATC TGGTGTCTTT GCCCAGATCA TTATGTGTCA
  TTAGCTGGCT GCCATTTCCC CCAGTGTCCC TAAATAACAC AGTGCTAGGT AATCATACAG
  CAGATGCTAT GGCGGAGGCC TGGTTCTCCC ACAAGGATCA TCTCTCTCTA GTCCTGGTTC
  Y
  ACCTCATCCT CCCAAGATTC CTTGCTCTTC TAACTCCTTT TCCTAGGCCC CAGCTAACTC
  CTCCTCTAGA GCTCTTCCCC TCTCCAAGCT TTGCCAGGGT CTCTCCTTTC AGTACAGCCC
  TAGTCTTAAC CCTTAGGCCC TGCCTGTCTC AGGCCAGAGA ACTAGGTCTC TGGCAACCTC
  TCCCCACAGC CTCATTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873065	CHEV_12_3981212	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213556668					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4031212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4371	CpG island 4371	333 bp proximal
Efr3b	EFR3 homolog B	within coordinates
Gm59670	predicted gene, 59670	443 bp upstream
Rr265366	regulatory region 265366	within coordinates
Rr267337	regulatory region 267337	1836 bp proximal
Rr369491	regulatory region 369491	1178 bp upstream
Rr403219	regulatory region 403219	153 bp upstream