rs213556988 SNP Detail

Summary

• ID
  rs213556988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:3417821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAG CTGGCTCTTC TCAGGTCCTC
  Y
  ATTAACTTCA CCAGCCTCTT CATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322091735	CHEV_7_3368899	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213556988					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3417821 () rs orientation: forward

Symbol	Name	Function Class
Cacng7	calcium channel, voltage-dependent, gamma subunit 7	1084 bp downstream
Gm9567	predicted gene 9567	1122 bp downstream
Gm44257	predicted gene, 44257	1117 bp downstream
Gm72265	predicted gene, 72265	1083 bp upstream
Rr641804	regulatory region 641804	634 bp distal
Rr641805	regulatory region 641805	1212 bp proximal
Tssr64259	transcription start site region 64259	1903 bp downstream
Tssr64260	transcription start site region 64260	1880 bp downstream