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rs213560883 SNP Detail
Summary
  • ID
    rs213560883
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:142206865 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCATACCTCT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGCATAT GTGTTATGTG TATGTGTGTG TTAATGCCTG
TGGGTGTGAG TATAATCATG TGCTTTTTAG GGTAGGTAGG GAAAAGTGAG ATTTTGGGAC
TGGGGGCTTG TGCCAATTAA GTTCTATTTC CAGTTTTCAT GTTCTGTTCT TCTCCTTGGG
Y
TCTTTCACCC AGCCCCCTTG GTGACATGGG GGACATTTGT GATGGAATGA CCAGTGAAGA
AAGAGTTTGG GCGGCTATTG TTGTTCTCAG CCAGCTTTAC ACTAAAGGTG CTTGGGATAA
GGAGAGGGCA CTGAAGCAAT GACATGCCAC CTGCAAAATT TTGGGTCCCC TTCCTTTCTT
CTTGGGTTCT GGGATCCAAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373454554 MGP_WTSI_7_149839033 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213560883 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373454554 MGP_WTSI_7_149839033 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142206865 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi19966 CpG island 19966 1157 bp proximal
D7Mit46 DNA segment, Chr 7, Massachusetts Institute of Technology 46 33 bp distal
Gm49394 predicted gene, 49394 within coordinates
Igf2 insulin-like growth factor 2 within coordinates
Mir483 microRNA 483 1796 bp downstream
Rr167001 regulatory region 167001 535 bp proximal
Tssr2462 transcription start site region 2462 71 bp downstream
Tssr2463 transcription start site region 2463 716 bp downstream
Tssr70229 transcription start site region 70229 111 bp downstream
Tssr70230 transcription start site region 70230 18 bp downstream
Tssr70231 transcription start site region 70231 425 bp upstream
Tssr70232 transcription start site region 70232 461 bp upstream
Tssr70233 transcription start site region 70233 511 bp upstream
Tssr70234 transcription start site region 70234 537 bp upstream
Tssr70235 transcription start site region 70235 573 bp upstream
Tssr70236 transcription start site region 70236 605 bp upstream
Tssr70237 transcription start site region 70237 701 bp upstream
Tssr70238 transcription start site region 70238 720 bp upstream
Tssr70239 transcription start site region 70239 864 bp upstream
Tssr70240 transcription start site region 70240 1185 bp upstream
Tssr75849 transcription start site region 75849 1783 bp upstream
Tssr75850 transcription start site region 75850 1737 bp upstream
Tssr75851 transcription start site region 75851 1724 bp upstream
Tssr75852 transcription start site region 75852 1534 bp upstream
Tssr75853 transcription start site region 75853 1493 bp upstream
Tssr75854 transcription start site region 75854 1086 bp upstream
Tssr75855 transcription start site region 75855 902 bp upstream
Tssr75856 transcription start site region 75856 863 bp upstream
Tssr75857 transcription start site region 75857 848 bp upstream
Tssr75858 transcription start site region 75858 810 bp upstream
Tssr75859 transcription start site region 75859 754 bp upstream
Tssr75860 transcription start site region 75860 699 bp upstream
Tssr75861 transcription start site region 75861 667 bp upstream
Tssr75862 transcription start site region 75862 120 bp upstream
Tssr75863 transcription start site region 75863 89 bp upstream
Tssr75864 transcription start site region 75864 60 bp upstream
Tssr75865 transcription start site region 75865 27 bp upstream
Tssr75866 transcription start site region 75866 within coordinates
Tssr75867 transcription start site region 75867 42 bp downstream
Tssr75868 transcription start site region 75868 65 bp downstream
Tssr75869 transcription start site region 75869 75 bp downstream
Tssr75870 transcription start site region 75870 96 bp downstream
Tssr75871 transcription start site region 75871 137 bp downstream
Tssr75872 transcription start site region 75872 538 bp downstream
Tssr75873 transcription start site region 75873 560 bp downstream
Tssr75874 transcription start site region 75874 769 bp downstream
Tssr75875 transcription start site region 75875 806 bp downstream
Tssr75876 transcription start site region 75876 838 bp downstream
Tssr75877 transcription start site region 75877 914 bp downstream
Tssr75878 transcription start site region 75878 1190 bp downstream
Tssr75879 transcription start site region 75879 1212 bp downstream
Tssr75880 transcription start site region 75880 1262 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory