rs213562092 SNP Detail

Summary

• ID
  rs213562092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80204753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCTTTT CTTTTCTTTT
  CTTTTCTTTT TTCTTCTCTT TTTGTTTGGT GGTGGTGGTT TTTCAAGACA TAGTTTCTCT
  GTATAAACCT CTGTATAAGC CTTGGCTATC CTGGAACCCA TTTTACAGAC AAGGCTGGCC
  TCAAATTCAC AGAGCTTGCC TACCCCTGCC TCTTGAGCGC TGGGATTAAA GGCATGGACC
  Y
  CCACGCCTGA CCTTAGATTT TCTTTCATAA TCTCTCTCTG TGATAACTAT TGGAGATTGT
  ACACTCCGCG GTGTGCAGGT GCTTGGGCAT GAAAGAAGAT GTCAAGATGA GGATTTTTGC
  CTTCAAAGAC CAAAATCCCA TTTATTGTCA GTGGTTACAT GACACTGAGC ACACCCTATC
  AGATATCCTG GGAAAGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399169414	MGP_WTSI_17_80296664	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213562092					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399169414	MGP_WTSI_17_80296664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80204753 () rs orientation: forward

Symbol	Name	Function Class
Atl2	atlastin GTPase 2	1201 bp upstream
Cpgi9524	CpG island 9524	816 bp distal
Gm41625	predicted gene, 41625	114 bp downstream
Rr340218	regulatory region 340218	552 bp distal
Rr343143	regulatory region 343143	1048 bp proximal
Rr343144	regulatory region 343144	1648 bp proximal
Rr405462	regulatory region 405462	1076 bp downstream
Tssr149462	transcription start site region 149462	1358 bp upstream
Tssr149463	transcription start site region 149463	1305 bp upstream
Tssr149464	transcription start site region 149464	1263 bp upstream