rs213575898 SNP Detail

Summary

• ID
  rs213575898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121993950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATAGAAA TGTTGGATAA
  AGTGCTAGTG AAAATTGAGC TTTTCTTGGT GGGGGGTTGG CGGCGGTTTC GAGACAGGGT
  TTCTCTGTGT AGCCCTGGCT GTCCTGGAAC TCTGTAGACC AGGCTGGCCT GGAACTCAGA
  AATCCGCCTG CCTCTGCCTC CCGAGTACTG GGATTAAAGG CGTGCGTCAT CACCGGCCGG
  Y
  GGGCTTTTTG TTTTTGAATG GTGAAATAAT AAAAATAATG ATTTTCCCTT CAAAAGAACC
  TCTCATTCTT TGTAAAGTCA AAACTGTAAC GAGGGAACCA TGAGTGCTCG CCAATGCCTG
  TAATCCTAGC ACGTGGGCAG GCACGTGGGA GGGCACAGGC AGGAAGCTTT TGAGTTTGAG
  GGAAGCCTGG GCTATAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355480987	MGP_WTSI_2_121989205	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	C	C	T	T	T	T	T	T	C	C	C	C	T	C	C	C	C	T	T	T	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213575898					SNP	C	C	C	T	C	C	C	C	T	T	T	T	T	T	C	C	C	C	T	C	C	C	C	T	T	T	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480987	MGP_WTSI_2_121989205	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121993950 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patl2	protein associated with topoisomerase II homolog 2 (yeast)			Intron
Rr373780	regulatory region 373780			842 bp downstream
Rr563920	regulatory region 563920			1558 bp distal
Rr563921	regulatory region 563921			111 bp proximal
Trim69	tripartite motif-containing 69			Intron
				Noncoding-Transcript-Variant
Tssr19832	transcription start site region 19832			1910 bp downstream