rs213580320 SNP Detail

Summary

• ID
  rs213580320
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25112375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAGGAA GGGAGAGGCT
  AGAAGCTTCA TTGTGGCTGT CTGTTGGTTC TTAAAGGCTG TGTGGATTGT CACCAGTTAG
  AGGCTTCTGA TTTCTTGTAA CTGCTCAGGT GGAGTAGTGT CTACAATTTA ATCCTACACA
  AGAACACCCT TGGGAAATCA AGAGCAGGAA GGCGGTGCTG GTCAGTTTAG TACCAGATTG
  S
  ACCAGGTCTT TACGGGAATG TGGGAGGTAA AACTGGCCAA ACAAAAGAAA CCACACTCCA
  GAGAAAGGAA CAAATGACTG ACACCTTGGC ATGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTAT GTATGCTTGA CTCCTCCCCC ACTGTGGGGG GTTTCATTCT CTAAGCTTTT
  TTCTCACTTG AATTTCCGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121685	CHEV_7_26197969	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213580320					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25112375 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	64 bp upstream
Rr160903	regulatory region 160903	1574 bp distal
Rr164493	regulatory region 164493	755 bp proximal
Rr170192	regulatory region 170192	624 bp distal
Rr170193	regulatory region 170193	within coordinates
Tssr2143	transcription start site region 2143	148 bp upstream
Tssr2144	transcription start site region 2144	within coordinates
Tssr2145	transcription start site region 2145	15 bp downstream
Tssr2146	transcription start site region 2146	33 bp downstream
Tssr2147	transcription start site region 2147	76 bp downstream
Tssr71243	transcription start site region 71243	134 bp upstream
Tssr71244	transcription start site region 71244	109 bp upstream
Tssr71245	transcription start site region 71245	94 bp upstream
Tssr71246	transcription start site region 71246	65 bp upstream
Tssr71247	transcription start site region 71247	37 bp upstream