rs213584173 SNP Detail

Summary

• ID
  rs213584173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69559677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCTAGAAG GCAGAAGAAA AAACACCAAC ACATAGTGAT
  CAGACAAATG TGAAATACAT GGAAATCTCT TGGTAAGAGG GCAGTCAAAG GGCAGATGTC
  Y
  GCTCTCAGAA TACAAGGACT GATCCTTTGC CCAAAGCTTC CCTGATAAGC CAGGCAAAAG
  CCCTGGTAAG TAGAACACTA CCTGGGCTAA GGTAACAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730987	CHEV_11_69482353	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213584173					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69559677 () rs orientation: forward

Symbol	Name	Function Class
Eif4a1	eukaryotic translation initiation factor 4A1	within coordinates
Gm22988	predicted gene, 22988	784 bp downstream
Gm24029	predicted gene, 24029	875 bp upstream
Gm25835	predicted gene, 25835	1 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Tssr108764	transcription start site region 108764	1596 bp upstream
Tssr108765	transcription start site region 108765	1465 bp upstream
Tssr108766	transcription start site region 108766	140 bp downstream