rs213587820 SNP Detail

Summary

• ID
  rs213587820
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACCACAA GGTGAAAGCC
  TGTGTTGAGC CAAGAGCATC AAAACCAGAG GGAGGACTGA GCAGGCGCAA AGGAGGAAAG
  GGGAGGAGTC TGACTCACCC ACATTACCAC ACAGTTCAGA CAGCACAGAC AGGAGAAACC
  CTTTTCATAA ATAAAAGAGA GGTGGAGGTG GAAGACAGGA GCCAGGAGAC TCATGATTGC
  M
  ATGGGCTTTT GAAAAGCGAT CCTGACTGAG GTATCACTGA CAAGAACAAA GAATGAAAAA
  ACTCAACAAA AAGTATACAG TTAATGAAAT TATAGCATTG GGGAAAAAAA AGACAGACAC
  AAAGGAAAAA ACAAGAGAAA CAGGATATTG TGTGGAGATT TAAATGTGTG TATGTGTGTG
  AGTAGGTACG TATATGAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366873387	MGP_WTSI_5_137624347	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213587820					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873387	MGP_WTSI_5_137624347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177324 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	783 bp downstream
Tssr49309	transcription start site region 49309	1302 bp upstream
Tssr49310	transcription start site region 49310	1662 bp upstream
Tssr49311	transcription start site region 49311	1676 bp upstream
Tssr53917	transcription start site region 53917	1770 bp upstream
Tssr53918	transcription start site region 53918	1710 bp upstream
Tssr53919	transcription start site region 53919	1162 bp downstream
Tssr53920	transcription start site region 53920	1178 bp downstream
Tssr53921	transcription start site region 53921	1333 bp downstream
Tssr53922	transcription start site region 53922	1374 bp downstream
Tssr53923	transcription start site region 53923	1415 bp downstream
Tssr53924	transcription start site region 53924	1429 bp downstream
Tssr53925	transcription start site region 53925	1467 bp downstream
Tssr53926	transcription start site region 53926	1498 bp downstream
Tssr53927	transcription start site region 53927	1647 bp downstream
Tssr53928	transcription start site region 53928	1665 bp downstream
Tssr53929	transcription start site region 53929	1702 bp downstream
Tssr53930	transcription start site region 53930	1767 bp downstream
Tssr53931	transcription start site region 53931	1792 bp downstream
Tssr53932	transcription start site region 53932	1808 bp downstream
Tssr53933	transcription start site region 53933	1846 bp downstream
Tssr53934	transcription start site region 53934	1878 bp downstream
Tssr53935	transcription start site region 53935	1929 bp downstream
Tssr53936	transcription start site region 53936	1950 bp downstream