rs213591597 SNP Detail

Summary

• ID
  rs213591597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36415722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCTAGG AGCTTTAAGG
  GATCTTTTAG CAGCGGTGTC TATGTTTCCG TCCCATGCCC TTGGAAGGTA GATTTACAAT
  AGGCTGGATT TGTTTTGGCG TCTTTTGGTA GATTTTAAGA GGAAAAAGGA AAATGTTCAT
  TTACTGTAAG ACCCCCTTTC CCCGTCCTCC CTACCCCCAC CCCGCCCAAA AGACTTAAGG
  R
  AATTGTGGCT TTGAAAATCG GAGTGTTAAC TAGAGTATGG AAAAAGTTGC TGATTTCGGT
  TCTTTGAGTA CAGTACTAGT AAAACCATTT AAGTATCAGA CGAAAAGAGA GCTTTTGACA
  TTTGATTCAA ATGTTTCTGT TTGGACCTTT GGGGTACATA AAATGTCGGA TTCTGTGATT
  TTTTTTTTTA TGGACTTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584508	CHEV_18_36442323	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213591597					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36415722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9864	CpG island 9864	686 bp distal
Gm58393	predicted gene, 58393	1688 bp upstream
Pura	purine rich element binding protein A	within coordinates
Rr536081	regulatory region 536081	1699 bp distal
Rr536082	regulatory region 536082	1562 bp distal
Rr536083	regulatory region 536083	within coordinates
Rr536084	regulatory region 536084	1628 bp proximal
Tssr150597	transcription start site region 150597	1518 bp downstream
Tssr150598	transcription start site region 150598	1283 bp downstream
Tssr150599	transcription start site region 150599	1267 bp downstream
Tssr150600	transcription start site region 150600	1210 bp downstream
Tssr150601	transcription start site region 150601	1165 bp downstream
Tssr150602	transcription start site region 150602	1151 bp downstream
Tssr152929	transcription start site region 152929	1680 bp upstream