rs213593078 SNP Detail

Summary

• ID
  rs213593078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60214858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTTGCCT CCATGCTCGC TATGACTCTA
  TCCTTCTGGG GTCCTGGGAG AAAGAGATAA TGCCAAGGAA TGGGATCAGG CCGTATGTAC
  CTGGCAAGTA CCCAGTCCTG GGGATGTTAG CCAGCAGCCT CGGAACCTAG AGAGTGAGCC
  Y
  GAGTCTCCCC ACGTAAATGT CCATTCCCGC TTGCTAACAC AAAGCTTGCT GGCTCAGACG
  GTCCCTGAGG ACTCTGAAAC ACCCTCCAGC CTGGGTGGAC CCTGGCTTGA TGCCTACCTG
  TCCATTGCTG CCAGCATCAG GGTCCCGGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325223	CHEV_10_59841827	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213593078					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60214858 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr432129	regulatory region 432129	989 bp proximal
Rr432130	regulatory region 432130	1937 bp proximal
Tssr93630	transcription start site region 93630	1508 bp upstream
Tssr93631	transcription start site region 93631	1567 bp upstream
Tssr97724	transcription start site region 97724	1143 bp downstream