rs213599189 SNP Detail

Summary

• ID
  rs213599189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167893936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTTTTC CCTTCTGAGG
  CCAGGATCTC ACCTGGCTGC TCAGACCAGC CTCAAACCCT TAAACCTCAG GCTCACTCAG
  TTCTGGTTGA GCTTGAACTT GTGCTTCTGC CTCAGCCTCT GGACTAGCAA ATGTCAGGAG
  TTCCAGGACT ATAGTGCCAA GCTCCACCCC CACTTTATAT TCTTTACACA GGGGTCTTAA
  R
  CCAGGCAAGG CAATTAGCAC ATCTAATCCC AGCACACATG AAGCTAGGCA GGAAGACCAG
  AGTTCAAGAC CAGCGTGGGC TACATAAGAC CCTGCTTCTA AATCAGAAAA GCTGAGGGTG
  GCAGTGGGCT TCTGTAATCC CAGAATTTAA GAGGGGGAAA CAGGAGGATT AGAAGTTCAA
  GGACAGCTTT AGCTACATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356517458	MGP_WTSI_2_167877516	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213599189					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356517458	MGP_WTSI_2_167877516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167893936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12760	CpG island 12760	1106 bp distal
Gm57439	predicted gene, 57439	1589 bp upstream
Rr406967	regulatory region 406967	1146 bp distal
Rr570860	regulatory region 570860	1660 bp distal
Rr570861	regulatory region 570861	1803 bp distal
Rr570862	regulatory region 570862	1101 bp distal
Rr570863	regulatory region 570863	761 bp proximal
Rr570864	regulatory region 570864	858 bp proximal
Tssr27820	transcription start site region 27820	1935 bp upstream
Tssr27821	transcription start site region 27821	1652 bp upstream
Tssr27822	transcription start site region 27822	1616 bp upstream
Tssr27823	transcription start site region 27823	1588 bp upstream
Tssr27824	transcription start site region 27824	64 bp upstream