rs213602173 SNP Detail

Summary

• ID
  rs213602173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAATCACAT TTATGGTGAA ACTCTGGACA
  GACAACATAA ACTGCGCCTT TTCAAGGATG GAAAATTGAA ATATCAGGTA TTTTCCTTAT
  GGTTTAAAAA TGACCATCTG TCATTTAGAC TTACATATTA AAACTATTGT GGCTTTTTTT
  Y
  CCTTCTTTTA ACTCTGTTAT TATTGTTGTG ATTTAGGTCA TTGGTGGAGA GGTGTATCCC
  CCCACAGTCA AAGACACTCA GGTAGAGATG ATCTACCCTC CTCACATCCC TGAGAACCTG
  CAGTTTGCTG TGGGGCAGGA AGTCTTTGGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045534	CHEV_1_151950962	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213602173					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979583 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	418 bp proximal
Rr24983	regulatory region 24983	450 bp proximal
Tssr242	transcription start site region 242	1027 bp downstream
Tssr9230	transcription start site region 9230	1719 bp downstream
Tssr9231	transcription start site region 9231	1686 bp downstream
Tssr9232	transcription start site region 9232	1643 bp downstream
Tssr9233	transcription start site region 9233	1187 bp downstream
Tssr9234	transcription start site region 9234	1158 bp downstream
Tssr9235	transcription start site region 9235	1127 bp downstream
Tssr9236	transcription start site region 9236	1102 bp downstream
Tssr9237	transcription start site region 9237	1070 bp downstream
Tssr9238	transcription start site region 9238	1039 bp downstream
Tssr9239	transcription start site region 9239	1005 bp downstream
Tssr9240	transcription start site region 9240	991 bp downstream
Tssr9241	transcription start site region 9241	961 bp downstream
Tssr9242	transcription start site region 9242	945 bp downstream
Tssr9243	transcription start site region 9243	818 bp downstream
Tssr9244	transcription start site region 9244	767 bp downstream
Tssr9245	transcription start site region 9245	731 bp downstream
Tssr9246	transcription start site region 9246	712 bp downstream
Tssr9247	transcription start site region 9247	577 bp downstream
Tssr9248	transcription start site region 9248	144 bp downstream
Tssr9249	transcription start site region 9249	130 bp downstream
Tssr9250	transcription start site region 9250	28 bp upstream
Tssr9251	transcription start site region 9251	74 bp upstream
Tssr9252	transcription start site region 9252	129 bp upstream
Tssr9253	transcription start site region 9253	159 bp upstream
Tssr9254	transcription start site region 9254	186 bp upstream
Tssr9255	transcription start site region 9255	205 bp upstream
Tssr9256	transcription start site region 9256	445 bp upstream
Tssr9257	transcription start site region 9257	469 bp upstream
Tssr9258	transcription start site region 9258	492 bp upstream
Tssr9259	transcription start site region 9259	517 bp upstream
Tssr9260	transcription start site region 9260	572 bp upstream
Tssr9261	transcription start site region 9261	627 bp upstream
Tssr9262	transcription start site region 9262	635 bp upstream
Tssr9263	transcription start site region 9263	657 bp upstream
Tssr9264	transcription start site region 9264	702 bp upstream
Tssr9265	transcription start site region 9265	733 bp upstream
Tssr9266	transcription start site region 9266	822 bp upstream
Tssr9267	transcription start site region 9267	1113 bp upstream
Tssr9268	transcription start site region 9268	1169 bp upstream
Tssr9269	transcription start site region 9269	1552 bp upstream
Tssr9270	transcription start site region 9270	1592 bp upstream
Tssr9271	transcription start site region 9271	1616 bp upstream
Tssr9272	transcription start site region 9272	1646 bp upstream
Tssr9273	transcription start site region 9273	1698 bp upstream
Tssr9274	transcription start site region 9274	1716 bp upstream
Tssr9275	transcription start site region 9275	1743 bp upstream
Tssr9276	transcription start site region 9276	1758 bp upstream
Tssr9277	transcription start site region 9277	1808 bp upstream
Tssr9278	transcription start site region 9278	1829 bp upstream
Tssr9279	transcription start site region 9279	1850 bp upstream
Tssr9280	transcription start site region 9280	1867 bp upstream
Tssr9281	transcription start site region 9281	1973 bp upstream