rs213609206 SNP Detail

Summary

• ID
  rs213609206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:51893403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCTCAT TCTGTTGCTT
  ATCTAGCAAT TTATTACTTT AAAAAATGGA CGGGATAGTT TTTAATATCC AAAATGAAAT
  GTTTTGATAA ATTGAATGCT TCCCAAAAAT ATAGAGAGCA GAATGTTAAC AAAATTCACA
  CAATTTCATG GCCAGGTGGC TTGCTGGAAA CCTACAACCG CAGTCTTAGA ACTATAATTT
  Y
  ACTTATTAAA ACAGGGTAAC TTGCTATGTA GACCAGGCTG GCCCCAATCT CACATAGTTC
  TGACTTCCTC TCTCCTGAGT GCTGGGGTTA GGAGTTAGTT TGTGATGACA GGGGCTCACT
  AATTCATGCT TTGCTCCTTG CAAATATTTA GTTCATAACA AATCTTAAGT AAACATATAG
  CAGGTCTCAC AACATTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383367123	MGP_WTSI_11_51816078	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213609206					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383367123	MGP_WTSI_11_51816078	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:51893403 () rs orientation: forward

Symbol	Name	Function Class
Cdkl3	cyclin dependent kinase like 3	1645 bp upstream
Cpgi2846	CpG island 2846	1632 bp distal
Cpgi2847	CpG island 2847	1476 bp proximal
Gm12204	predicted gene 12204	665 bp downstream
Rr246699	regulatory region 246699	802 bp distal
Rr246700	regulatory region 246700	597 bp proximal
Rr386068	regulatory region 386068	within coordinates
Tssr101302	transcription start site region 101302	1648 bp downstream
Tssr101303	transcription start site region 101303	1628 bp downstream
Tssr101304	transcription start site region 101304	1615 bp upstream
Tssr101305	transcription start site region 101305	1644 bp upstream
Tssr101306	transcription start site region 101306	1737 bp upstream
Tssr101307	transcription start site region 101307	1764 bp upstream
Tssr107842	transcription start site region 107842	1832 bp upstream
Tssr107843	transcription start site region 107843	1801 bp upstream
Tssr107844	transcription start site region 107844	1782 bp upstream
Ube2b	ubiquitin-conjugating enzyme E2B	1814 bp upstream