rs213609228 SNP Detail

Summary

• ID
  rs213609228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35024461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cccagctag ccctcaagct tacgtagcaa
  gtgcttttct caccgaagca tcttgctagc ccTAGTAAAT TGAGTCAaaa aaacaaaaaa
  caaaaaacaa acaaaaaaaa caaaacaaaa caagaccaaa aaaaacCCAC ctcatgtaat
  Y
  caggctggcc tacagtcttt gaactcctgg tcctcctgcc tccacctcag aaatactagg
  attacataga tgaaccacca ttcccagccc tacgTCCCTT CTTTATTCTA AGAGTGTGCT
  TCAGTGGTAT GGGACAGAGG GTAGACTGTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899084	CHEV_9_34920750	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213609228					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35024461 () rs orientation: forward

Symbol	Name	Function Class
Rr194554	regulatory region 194554	1540 bp proximal
Rr206179	regulatory region 206179	860 bp distal
Rr206180	regulatory region 206180	939 bp proximal
Rr383192	regulatory region 383192	86 bp downstream
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates