rs213612709 SNP Detail

Summary

• ID
  rs213612709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138172696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATTAGATG ATTTGCTTTT TACAGGCTCA
  GGAATTATCT CTTTTGACTA GCGAGCGGGG GGGGGGGGGG GGGTATTATC AAAACAAGTA
  AATACAACAG TGTCAGAGGA TCTCAGTTGC TTTCAAAGCT CTCACGAAAT AAAACCTAGC
  Y
  TTCCTCTCTA TTATGGCCCC CAAAGAGATC TGTCATACCT CAAATTTAAT AGAGGACCAT
  GCCAGTAATT ACAAAGCATG CTAGTAGAAA GAGCTAAATA TCCAGTAACA ATTTGCAAAG
  CCCTATTTTG AACCATAACA ACACATATGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320000287	CHEV_1_140141535	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213612709					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138172696 () rs orientation: forward

Symbol	Name	Function Class
Gm53479	predicted gene, 53479	within coordinates
Rr419685	regulatory region 419685	806 bp distal
Rr419686	regulatory region 419686	675 bp distal
Rr419687	regulatory region 419687	158 bp distal
Rr419688	regulatory region 419688	591 bp proximal
Rr419689	regulatory region 419689	1528 bp proximal