rs213613390 SNP Detail

Summary

• ID
  rs213613390
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAACTT TAAAAGGTCA
  TCTTTTGTTA AATTTCCTGT GTTGGAAAAT TGAGTAAGAT GATTAGGTAT GTAAGTAACT
  TTAATTAATC ATTTAAAAAA GAGGTCAACA TAATTTTTGC TCTCCTGAGA AAATGGAGAA
  AGGTACTTAA CCCTGGATGT AAAAGACTAA CCCAAAACGT TTAAGACTAA CTGTGGGAAA
  K
  TGGGAGGGCG AAGAGCACAG CTAAGCTGCT CTTTGTTGAT ATCAGAAACC AGCCTGTCAT
  TCACTTTGGC GTTGAAGCAT GGCCTATCTC AGGGGGCAGG ACCAGGACTC TTCCCTCCCA
  CAAGGGCTGG GCAGTTTCTG CAAGCTCAGA GAGCTCTGAG CAGTTTTTCA GGAGTTTCTC
  CTCCCCTTTT ACTGGGAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378570970	MGP_WTSI_9_96158991	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213613390					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378570970	MGP_WTSI_9_96158991	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140625 () rs orientation: forward

Symbol	Name	Function Class
Rr684927	regulatory region 684927	within coordinates
Rr684928	regulatory region 684928	181 bp proximal
Rr684929	regulatory region 684929	434 bp proximal
Rr684930	regulatory region 684930	724 bp proximal
Rr684931	regulatory region 684931	1213 bp proximal
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	648 bp upstream
Tssr86589	transcription start site region 86589	125 bp upstream
Tssr86590	transcription start site region 86590	142 bp upstream
Tssr86591	transcription start site region 86591	156 bp upstream
Tssr86592	transcription start site region 86592	219 bp upstream
Tssr86593	transcription start site region 86593	234 bp upstream
Tssr86594	transcription start site region 86594	436 bp upstream
Tssr86595	transcription start site region 86595	674 bp upstream
Tssr86596	transcription start site region 86596	698 bp upstream