rs213625937 SNP Detail

Summary

• ID
  rs213625937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93777284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGAGAGGC ACCGGCCCCC TGCTCGCGGG
  GGGGGAGGGG GCGCCGCGGG CTCGGGGAGC ACGGACGGCC CCTACCCATG AGGCCCTGAT
  GGAAAACACA AAGGATCTGG TGAGAGCCGA GCGCAGCGGC CGCTTTGTGT GCCAGGTTTG
  R
  GGGGGGGGGG CACGCCTGCG GCTGCCCGGC CCCCGGAACG CCGCAGCTCG GGGACCCCAC
  TCGCGGGCCT GCTTCTTCAT CCCACGCCCC CTCCGTCTCC GGAGCTCCCC TCCCCCTACT
  GGCCGTTAAA CGTTCAGGGG TTCCCCTCCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323810025	CHEV_11_93747772	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213625937					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93777284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	within coordinates
Gm72169	predicted gene, 72169	1824 bp downstream
Mbtd1	mbt domain containing 1	within coordinates
Rr247507	regulatory region 247507	within coordinates
Rr366736	regulatory region 366736	364 bp downstream
Tssr3641	transcription start site region 3641	581 bp downstream
Tssr104149	transcription start site region 104149	1317 bp downstream
Tssr104150	transcription start site region 104150	1169 bp downstream
Tssr104151	transcription start site region 104151	534 bp downstream
Tssr104152	transcription start site region 104152	304 bp downstream
Tssr104153	transcription start site region 104153	248 bp downstream
Tssr104154	transcription start site region 104154	224 bp downstream
Tssr104155	transcription start site region 104155	199 bp downstream
Tssr110107	transcription start site region 110107	739 bp upstream
Tssr110108	transcription start site region 110108	717 bp upstream
Tssr110109	transcription start site region 110109	685 bp upstream
Tssr110110	transcription start site region 110110	318 bp upstream
Tssr110111	transcription start site region 110111	44 bp downstream
Utp18	UTP18 small subunit processome component	692 bp upstream