rs213638197 SNP Detail

Summary

• ID
  rs213638197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52845152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaggaaaat atgtaataaa aataaataAA
  TAAATAAAAA TTCAAATGGT CTTAAAAATA CTAACTTGTC ATTAACTTCA CTTAATTAGA
  CTAATAgggc tggcaagatg gctcagtgga taagagcact gactgctctt ctgaaggtcc
  Y
  gagttcaaat cccagcaacc acatggtgat tcacaaccac ccgtaatgag atctgatacc
  ctcttctggt gctgtctgaa gatagctaca gtgtatttat ttataataat aataaataaa
  tctttGGGCT GGAATGAGCA GGGACTGAGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324040919	CHEV_12_53899356	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213638197					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52845152 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	within coordinates
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	1121 bp downstream
Rr466053	regulatory region 466053	1582 bp distal
Rr466054	regulatory region 466054	1355 bp proximal