rs213643092 SNP Detail

Summary

• ID
  rs213643092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACACTTCAA GAAATGTTTT AAATCTATGA
  TTATAATTAA AGCTCTTTTA AAAAGCACCC AAGGTTTTTC GGTCGTTGCT GTTTGGGTTT
  TTTTTTTTCC CCCTGTGTTT TACTCTTTAA AAACAGGGGA GCCTCGTTTC ATCCCTGTGC
  Y
  GGTCTTAGTG AGAAGGGCTA Taagaaagaa agaaagaaag aaagaaagaa agaaagaaag
  aaagaaagaa agaaagaaag aaagaTCTTC TAACTAGCTC TGGTTGTTCC CAATTTTGCC
  TGGAGAAAAA TGGACAATCC ACAGTGTAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342579	CHEV_2_72313503	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213643092					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305790 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	750 bp upstream
Cpgi11756	CpG island 11756	466 bp proximal
Rr397036	regulatory region 397036	320 bp upstream
Tssr18351	transcription start site region 18351	550 bp upstream
Tssr18352	transcription start site region 18352	727 bp upstream
Tssr18353	transcription start site region 18353	767 bp upstream
Tssr18354	transcription start site region 18354	779 bp upstream