rs213646595 SNP Detail

Summary

• ID
  rs213646595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91035284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTACCCCAG TGGAGATAGC TGTTCCATGG
  TTACTGCTTG CAGCCACAGT TGTCTCAATC CTCTAGATTA CTGTTCCCTA AAGACCTAGC
  TCTACCCTGA GCTTGCCCTT CGCTTCCCTA TTTTCTTCCT CCCTTTTCAC AAGTCACCTC
  R
  CTGTTCCTTT TCCCCCCTTC TTCCCATTTA TAAAAGGAAA GGGAGTGTGG TGAAGAGTGG
  TATTTGCCAT TTGGACTCTA GGGTATTGCt tttgtgtttt taaacagggt ctcattttat
  ggtactggct agtcttgaac tcagagattt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391968	CHEV_2_91045096	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213646595					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91035284 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
Cpgi11901	CpG island 11901	1862 bp distal
Rr367226	regulatory region 367226	1918 bp downstream
Tssr18871	transcription start site region 18871	1672 bp downstream
Tssr18872	transcription start site region 18872	873 bp upstream
Tssr18873	transcription start site region 18873	1086 bp upstream
Tssr18874	transcription start site region 18874	1518 bp upstream
Tssr18875	transcription start site region 18875	1570 bp upstream
Tssr18876	transcription start site region 18876	1594 bp upstream
Tssr18877	transcription start site region 18877	1840 bp upstream