rs213661939 SNP Detail

Summary

• ID
  rs213661939
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45650324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACTTGA GCATCAATAT
  TTTGCACCTA AAAGGCACTT GAATAGAACT AAATGCAAGA AGAGCCATCT TTGGGTCTCC
  CAAACCCCAA AGCAGAACGT CAAACCACCA TGTAAACTAC TGCTACCCCA AATACTTTTA
  CCCGAGGTGA GGCGTTAAGG AAGCTAGAAA TCTGCCCAAA TGAACCTTAT TTAGCTAATT
  M
  TTACATTCTT TTTGTTTTCC TTTATGCTTA GTTACTTTTT CATAACTATT TACTATTCAA
  TATAAGCACT TGGACCTGAT CACTTTCAGG ATCCTCATTT TCCTGTAAGG GCTTCCATGT
  ATACACAAAC TTGTTAAATA AAATTGACAT ACTTCTGTTA AACTGCCTTA AACCAAATTC
  TCAGGCTTCC CACGCGAGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364763725	MGP_WTSI_5_45884221	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	QSi3/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213661939					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364763725	MGP_WTSI_5_45884221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45650324 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15838	CpG island 15838	136 bp proximal
Gm71433	predicted gene, 71433	within coordinates
Lap3	leucine aminopeptidase 3	392 bp upstream
Rr377893	regulatory region 377893	1855 bp upstream
Rr399075	regulatory region 399075	154 bp upstream
Rr611067	regulatory region 611067	774 bp distal
Rr611068	regulatory region 611068	within coordinates
Rr611069	regulatory region 611069	237 bp proximal
Rr611070	regulatory region 611070	403 bp proximal
Tssr1476	transcription start site region 1476	392 bp upstream
Tssr46135	transcription start site region 46135	403 bp upstream
Tssr46136	transcription start site region 46136	467 bp upstream
Tssr46137	transcription start site region 46137	499 bp upstream