rs213669671 SNP Detail

Summary

• ID
  rs213669671
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129272987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACAAAGA GGGTAGGGAG
  CCAAAATGGT TGGATTATAT AGGGAAGAAT AGCTCAGCCC CCTGGACTGG AGGATTCAAG
  CTAGGGGGCC GGATATGCCA GCCTAGAGGA CCCTGTAACA GGTATTGGAC TGAGGGATGC
  TGGGAGAACC TGGTGGCCAG GTCAGCTTTG ACATGTTAAC TAGGCACCCC AGCTATTTGT
  S
  CCAGGTTTGA CACCTAACAG TTTCTTAATG TCACACCTGT TTACCCCAGG GGTGCTCTGT
  GATTAAGATT CGTTTCCTGG ACTTTTGAGG TAATGGGAGA TAATGGAAGG AAAGGTAGAC
  CAGTGCTTAT TTGAAAATCA CTAGGACAGG GCTGGTGAGA TGGCTCAGCG GTTAAGAGCA
  CTGACTGCTC TTCCAAAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312501	CHEV_4_129056438	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213669671					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129272987 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1115 bp distal
Gm12980	predicted gene 12980	650 bp upstream
Rr377177	regulatory region 377177	620 bp upstream
Rr600215	regulatory region 600215	1089 bp distal
Rr600216	regulatory region 600216	1613 bp distal
Rr600217	regulatory region 600217	822 bp distal
Tssr43497	transcription start site region 43497	1356 bp upstream
Tssr43498	transcription start site region 43498	1270 bp upstream
Tssr43499	transcription start site region 43499	1244 bp upstream
Tssr43500	transcription start site region 43500	188 bp upstream
Zbtb8a	zinc finger and BTB domain containing 8a	1166 bp upstream