rs213672569 SNP Detail

Summary

• ID
  rs213672569
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30989196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGTGCTG GCTGGTCCTC
  GCCACCAAAC GCTCCGGTCG CTAGAGCCGC GAGTTCGCCT CAACTTGGAA CGCCTCTCCG
  GCGGGCGGAA CCCTGTAGCC CGAGGCCATA GCTCTGTCGC GCTGGCCAAC GGTTTACCTT
  GGCCCTTGCG CCCGGGGATC TCCGTCATCA CTCCATATTG ATGTCGCATG ACCGCTGGGC
  K
  GCTGACTCAC CGCTCCAGAG CCCGGCCCTA GTCTGGGACT AGGGATTCTC GTCACCACGG
  GCACTTCCAC GTGTGGGAAG GCTCTCCGCA GAGATTAGCC GGTGGAACCC AGGAAATGTC
  CCTATTTTTT TTTTTTTTTT TCTTTCGAGG CACGTGAAGC CTAGTTGCTT CCTAGCCTTT
  CTTCTTCTCC CCCCACCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349112171	MGP_WTSI_1_31006960	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213672569					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349112171	MGP_WTSI_1_31006960	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30989196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi100	CpG island 100	within coordinates
Gm53209	predicted gene, 53209	within coordinates
Ptp4a1	protein tyrosine phosphatase 4a1	358 bp upstream
Rr408767	regulatory region 408767	817 bp distal
Rr408768	regulatory region 408768	16 bp distal
Rr408769	regulatory region 408769	697 bp distal
Rr408770	regulatory region 408770	within coordinates
Tssr6137	transcription start site region 6137	233 bp downstream
Tssr6138	transcription start site region 6138	206 bp downstream
Tssr6139	transcription start site region 6139	140 bp upstream
Tssr11170	transcription start site region 11170	1437 bp upstream
Tssr11171	transcription start site region 11171	1014 bp upstream
Tssr11172	transcription start site region 11172	778 bp upstream
Tssr11173	transcription start site region 11173	358 bp upstream
Tssr11174	transcription start site region 11174	235 bp upstream
Tssr11175	transcription start site region 11175	189 bp upstream
Tssr11176	transcription start site region 11176	77 bp upstream
Tssr11177	transcription start site region 11177	within coordinates
Tssr11178	transcription start site region 11178	26 bp downstream