rs213673252 SNP Detail

Summary

• ID
  rs213673252
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAAAGAT TAATCCTGAT
  TTACAAAAAA ATATTTTTTG ACCCAGGGTC TCTTCACAAG CCCAAGTTGG ACTCGAACCT
  GCAATTTTCC TGCCTTTGCC TCTCACATGC TGGGAGACAA ATGAAAGAAC TTAGGGAAGC
  GCAGAAAACC ATCACCACTA CAGGATCGTC CCAGAAGGCA GAATCTCGCC CACAGAGAAA
  S
  TGTAACTGAA AAGTACAGAA GTTACTATTC TTGAAAAGCC AGTAACTCTT TTGATTCTGT
  TTAAGGATGG TTTTCCTGAG CCAGTGAAAT GGCTCAGTGC GCAAAGGGGC TTGCTGCCAA
  ATCTGATAAC CTAAGTTCAG TTCCCGGAAC CCACATGGAC TATCTGTGCC ACGGCATGTA
  TGAGACCGCG CGCGCGCGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513535	CHEV_10_121022160	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213673252					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	1143 bp proximal
Rr402304	regulatory region 402304	768 bp upstream
Rr402305	regulatory region 402305	1622 bp upstream
Rr440247	regulatory region 440247	152 bp proximal
Rr440248	regulatory region 440248	1673 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	1113 bp upstream
Tssr96044	transcription start site region 96044	1149 bp upstream
Tssr99623	transcription start site region 99623	769 bp downstream
Tssr99624	transcription start site region 99624	797 bp downstream
Tssr99625	transcription start site region 99625	818 bp downstream
Tssr99626	transcription start site region 99626	1606 bp downstream
Tssr99627	transcription start site region 99627	1626 bp downstream
Tssr99628	transcription start site region 99628	1709 bp downstream
Tssr99629	transcription start site region 99629	1737 bp downstream
Tssr99630	transcription start site region 99630	1765 bp downstream