rs213677644 SNP Detail

Summary

• ID
  rs213677644
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62767535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACGGCTTC CAGAGAAATA
  AGTCCTTTAA GTACGGTTCA ACCCAGACTG TTTCCGGCTA CCTTGGAGAC TTCCTGCAAC
  CTGCCTCTCT TCTTATAGAA GCGTGTGCAC TTTCTAGACA TATTCCCTCA TGGTCCACTA
  AGACTCAGCC TAACAGCACC CTATATTCCT GGGTGCTACT TCCGTGCCCA GCAAACGGGG
  K
  ATTTTAACAC ATGCATTTCC ACTGTGCAGC GAGGCCAGGG CTGTGACTTG CATTCCTGAC
  CGGGTCTGGC TTTGCTCTGA GAGCCACCAC AGTGTTTCAG GATGTATATC GGGACACAGC
  ATCCAAGTGG CACTTTGAGA GGAGGAAACA GTTCCAGCTG ACTGGCCACC AAGGGCCACA
  TTCAGAATCT CCACCCTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349852006	MGP_WTSI_1_62774950	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213677644					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349852006	MGP_WTSI_1_62774950	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62767535 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr7001	transcription start site region 7001	1968 bp downstream
Tssr7002	transcription start site region 7002	1882 bp downstream
Tssr7003	transcription start site region 7003	1834 bp downstream
Tssr7004	transcription start site region 7004	1652 bp downstream
Tssr7005	transcription start site region 7005	1593 bp downstream
Tssr7006	transcription start site region 7006	1433 bp downstream
Tssr7007	transcription start site region 7007	1408 bp downstream
Tssr7008	transcription start site region 7008	1374 bp downstream
Tssr7009	transcription start site region 7009	1304 bp downstream
Tssr7010	transcription start site region 7010	1234 bp downstream
Tssr7011	transcription start site region 7011	1199 bp downstream
Tssr7012	transcription start site region 7012	1930 bp upstream
Tssr7013	transcription start site region 7013	1952 bp upstream
Tssr11873	transcription start site region 11873	1058 bp downstream