rs213677692 SNP Detail

Summary

• ID
  rs213677692
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53250924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATATAA ATATTATAAC
  ATATATACAT ATTACATGCA TATACATATA AGTCAAGTAG ATACATACAT ATTCATGCAT
  ATGTATATAT TAAATACACA TCACATATCA CGCATATCCA GAGTAGATTT TGGAAAAAAA
  AAAAGAAGCA CTCTAAATGG TTTTATTTTT CTTTTCTTTC TTTTTTTTTT TTTTTTTGTG
  K
  GGGGGGGTGG TTACATGAAA ACTCTTCATG GTTTCAAAGA ACTGAAATTT TCTAAAACAT
  ATTTGGATCA GCAAGATATG AAATGAATGT GTCCCCTGCC TTGCCAGCTT GGATGTTGGC
  CATCCATGTA GAAGATGTAA TGAGAAAGAC CTACAGAGCT GGCTTCCCGT AAGGAATGCT
  GTACAGACTG CGCCCGTGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss377604646	MGP_WTSI_9_53147729	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	G	T	G	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs213677692					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	G	T	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377604646	MGP_WTSI_9_53147729	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53250924 () rs orientation: forward

Symbol	Name	Function Class
Exph5	exophilin 5	within coordinates
Tssr85124	transcription start site region 85124	1007 bp upstream
Tssr85125	transcription start site region 85125	1436 bp upstream
Tssr85126	transcription start site region 85126	1458 bp upstream
Tssr85127	transcription start site region 85127	1585 bp upstream
Tssr85128	transcription start site region 85128	1603 bp upstream
Tssr85129	transcription start site region 85129	1630 bp upstream
Tssr85130	transcription start site region 85130	1717 bp upstream