rs213678166 SNP Detail

Summary

• ID
  rs213678166
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145878264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCCCAACC TAAGATTGGG CATCCTTTAT
  TATCTCCCTT AACATCTTGG CTACATAATT TCCTTTTGAA TAAAGTTTCC AAATGTTAAA
  ATAACCATAG AAGAAAGTCT AAACTCCCCA TGGAACTGGG ACTTTTTTTT TTTTTTtttt
  K
  gtttttcaag acagggtttc tctgtgtagc cctggctatc ctggaactca ctttgtaaac
  cagactggcc tcaaactcag aaatccgcct gcctctgcct ctcgagtgct gggattaaag
  gcgtgagcca ccactcccCA CTGGGACTAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322075150	CHEV_6_145881058	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213678166					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145878264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	1494 bp proximal
Rr641246	regulatory region 641246	165 bp proximal
Rr641247	regulatory region 641247	1213 bp proximal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	1575 bp upstream
Tssr59565	transcription start site region 59565	1599 bp upstream