rs213680358 SNP Detail

Summary

• ID
  rs213680358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78715741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgttttatt tgtgtttttt tttttttttt
  tttttttgct tttacaagac aaaacagccc tgtttctctg tgtaacagcc ctgggtgtcc
  tggaactcga tttgtagagc agcctggcct cgaactcaca gagctccacc tgcctctgcc
  Y
  ctggagtgtt tggattaaag gtgtgcacct ccttgcctgg ctTGGATTAT TCTTAAATCC
  AAGTTCTCAC TGTGACTCGG TAAAAGAAAG GGAGCTGCTA TCCACATCTC TCCCTCAAGC
  TAAAAAATAA AAAAATTTCT TTTCTGTTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323757665	CHEV_11_78638417	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213680358					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78715741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	1514 bp proximal
D11Bhm78	DNA segment, Chr 11, Boehm 78	1349 bp distal
D11Bhm79	DNA segment, Chr 11, Boehm 79	337 bp distal
Gm23219	predicted gene, 23219	442 bp downstream
Lyrm9	LYR motif containing 9	1680 bp upstream
Rr452072	regulatory region 452072	1444 bp distal
Rr452073	regulatory region 452073	1915 bp distal
Rr452074	regulatory region 452074	235 bp proximal
Rr452075	regulatory region 452075	1204 bp proximal
Rr452076	regulatory region 452076	1606 bp proximal
Rr452077	regulatory region 452077	1680 bp proximal
Rr452078	regulatory region 452078	1689 bp proximal
Rr452079	regulatory region 452079	1863 bp proximal
Tssr103332	transcription start site region 103332	1660 bp upstream